affine_gap_init_policy class | seqan3::detail::simd_find_optimum_policy< alignment_algorithm_t, simd_t > | friend |
alignment_algorithm_t | seqan3::detail::simd_find_optimum_policy< alignment_algorithm_t, simd_t > | private |
check_and_update(cell_t const &cell, alignment_algorithm_state< score_t > &state) const noexcept | seqan3::detail::simd_find_optimum_policy< alignment_algorithm_t, simd_t > | inlineprivate |
check_and_update(cell_t const &cell, alignment_algorithm_state< score_t > &state) const noexcept | seqan3::detail::simd_find_optimum_policy< alignment_algorithm_t, simd_t > | inlineprivate |
check_score_of_cell([[maybe_unused]] cell_t const ¤t_cell, [[maybe_unused]] alignment_algorithm_state< score_t > &state) const noexcept | seqan3::detail::simd_find_optimum_policy< alignment_algorithm_t, simd_t > | inlineprotected |
check_score_of_cells_in_last_column([[maybe_unused]] alignment_column_t &&last_column, [[maybe_unused]] alignment_algorithm_state< score_t > &state) const noexcept | seqan3::detail::simd_find_optimum_policy< alignment_algorithm_t, simd_t > | inlineprotected |
check_score_of_last_cell([[maybe_unused]] cell_t const &last_cell, [[maybe_unused]] alignment_algorithm_state< score_t > &state) const noexcept | seqan3::detail::simd_find_optimum_policy< alignment_algorithm_t, simd_t > | inlineprotected |
check_score_of_last_row_cell([[maybe_unused]] cell_t const &last_row_cell, [[maybe_unused]] alignment_algorithm_state< score_t > &state) const noexcept | seqan3::detail::simd_find_optimum_policy< alignment_algorithm_t, simd_t > | inlineprotected |
coordinate_offset | seqan3::detail::simd_global_alignment_state< simd_t > | |
initialise_find_optimum_policy([[maybe_unused]] sequence1_collection_t &&sequence1_collection, [[maybe_unused]] sequence2_collection_t &&sequence2_collection, [[maybe_unused]] score_t const padding_score) | seqan3::detail::simd_find_optimum_policy< alignment_algorithm_t, simd_t > | inlineprotected |
is_global_alignment | seqan3::detail::simd_find_optimum_policy< alignment_algorithm_t, simd_t > | private |
last_column_mask | seqan3::detail::simd_global_alignment_state< simd_t > | |
last_row_mask | seqan3::detail::simd_global_alignment_state< simd_t > | |
operator=(simd_find_optimum_policy const &)=default | seqan3::detail::simd_find_optimum_policy< alignment_algorithm_t, simd_t > | private |
operator=(simd_find_optimum_policy &&)=default | seqan3::detail::simd_find_optimum_policy< alignment_algorithm_t, simd_t > | private |
score_offset | seqan3::detail::simd_global_alignment_state< simd_t > | |
simd_affine_gap_policy class | seqan3::detail::simd_find_optimum_policy< alignment_algorithm_t, simd_t > | friend |
simd_find_optimum_policy()=default | seqan3::detail::simd_find_optimum_policy< alignment_algorithm_t, simd_t > | private |
simd_find_optimum_policy(simd_find_optimum_policy const &)=default | seqan3::detail::simd_find_optimum_policy< alignment_algorithm_t, simd_t > | private |
simd_find_optimum_policy(simd_find_optimum_policy &&)=default | seqan3::detail::simd_find_optimum_policy< alignment_algorithm_t, simd_t > | private |
simd_find_optimum_policy(configuration_t const &config) | seqan3::detail::simd_find_optimum_policy< alignment_algorithm_t, simd_t > | inlineprivate |
test_every_cell | seqan3::detail::simd_find_optimum_policy< alignment_algorithm_t, simd_t > | private |
test_last_column_cell | seqan3::detail::simd_find_optimum_policy< alignment_algorithm_t, simd_t > | private |
test_last_row_cell | seqan3::detail::simd_find_optimum_policy< alignment_algorithm_t, simd_t > | private |
~simd_find_optimum_policy()=default | seqan3::detail::simd_find_optimum_policy< alignment_algorithm_t, simd_t > | private |